cdyl protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cdyl

Chromodomain protein, Y-like. (543 aa)

Predicted Functional Partners:

scp2

0.943

hsdl2

0.925

LOC102696298

0.881

LOC102684155

0.881

LOC102694570

0.881

W5MA18_LEPOC

0.881

myd88

0.881

H3-3B

0.881

LOC102684155-2

0.881

acaa1

0.875

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3-3B	cdyl	ENSLOCP00000014217	ENSLOCP00000014301	Histone H3; Belongs to the histone H3 family.	Chromodomain protein, Y-like.	0.881
LOC102684155	cdyl	ENSLOCP00000004314	ENSLOCP00000014301	Histone H3; Belongs to the histone H3 family.	Chromodomain protein, Y-like.	0.881
LOC102684155-2	cdyl	ENSLOCP00000017461	ENSLOCP00000014301	Histone H3.3.	Chromodomain protein, Y-like.	0.881
LOC102694570	cdyl	ENSLOCP00000005198	ENSLOCP00000014301	Selenoprotein H.	Chromodomain protein, Y-like.	0.881
LOC102696298	cdyl	ENSLOCP00000001022	ENSLOCP00000014301	Histone H3; Belongs to the histone H3 family.	Chromodomain protein, Y-like.	0.881
W5MA18_LEPOC	cdyl	ENSLOCP00000005227	ENSLOCP00000014301	Histone domain-containing protein.	Chromodomain protein, Y-like.	0.881
acaa1	cdyl	ENSLOCP00000011938	ENSLOCP00000014301	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Chromodomain protein, Y-like.	0.875
acaa1	hsdl2	ENSLOCP00000011938	ENSLOCP00000003430	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Hydroxysteroid dehydrogenase like 2.	0.972
acaa1	scp2	ENSLOCP00000011938	ENSLOCP00000007446	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	Sterol carrier protein 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.969
cdyl	H3-3B	ENSLOCP00000014301	ENSLOCP00000014217	Chromodomain protein, Y-like.	Histone H3; Belongs to the histone H3 family.	0.881
cdyl	LOC102684155	ENSLOCP00000014301	ENSLOCP00000004314	Chromodomain protein, Y-like.	Histone H3; Belongs to the histone H3 family.	0.881
cdyl	LOC102684155-2	ENSLOCP00000014301	ENSLOCP00000017461	Chromodomain protein, Y-like.	Histone H3.3.	0.881
cdyl	LOC102694570	ENSLOCP00000014301	ENSLOCP00000005198	Chromodomain protein, Y-like.	Selenoprotein H.	0.881
cdyl	LOC102696298	ENSLOCP00000014301	ENSLOCP00000001022	Chromodomain protein, Y-like.	Histone H3; Belongs to the histone H3 family.	0.881
cdyl	W5MA18_LEPOC	ENSLOCP00000014301	ENSLOCP00000005227	Chromodomain protein, Y-like.	Histone domain-containing protein.	0.881
cdyl	acaa1	ENSLOCP00000014301	ENSLOCP00000011938	Chromodomain protein, Y-like.	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.875
cdyl	hsdl2	ENSLOCP00000014301	ENSLOCP00000003430	Chromodomain protein, Y-like.	Hydroxysteroid dehydrogenase like 2.	0.925
cdyl	myd88	ENSLOCP00000014301	ENSLOCP00000011990	Chromodomain protein, Y-like.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.881
cdyl	scp2	ENSLOCP00000014301	ENSLOCP00000007446	Chromodomain protein, Y-like.	Sterol carrier protein 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.943
hsdl2	acaa1	ENSLOCP00000003430	ENSLOCP00000011938	Hydroxysteroid dehydrogenase like 2.	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.972