STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sparcSecreted protein, acidic, cysteine-rich (osteonectin). (329 aa)    
Predicted Functional Partners:
lum
Lumican.
   
  
 0.868
LOC102683252
Decorin; May affect the rate of fibrils formation.
   
  
 0.708
stab1
Stabilin 1.
     
 0.636
W5NCW4_LEPOC
Stabilin 2.
     
 0.636
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.584
W5M0Z8_LEPOC
Uncharacterized protein.
   
 
 0.476
col6a1
Collagen, type VI, alpha 1.
   
 
 0.476
fmod
Fibromodulin b.
   
  
 0.456
postn
Periostin, osteoblast specific factor b.
   
 
 0.451
W5MSL6_LEPOC
VWFA domain-containing protein.
   
   0.448
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.