tnip1 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tnip1

TNFAIP3 interacting protein 1. (651 aa)

Predicted Functional Partners:

W5NEC4_LEPOC

0.961

W5MIV7_LEPOC

0.920

optn

0.803

LOC107077521

0.628

vcpip1

0.628

zranb1

0.628

W5MRP9_LEPOC

0.628

OTUD7A

0.628

LOC102682818

0.624

plekhg5

0.584

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102682818	LOC107077521	ENSLOCP00000017560	ENSLOCP00000003066	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Uncharacterized protein.	0.517
LOC102682818	OTUD7A	ENSLOCP00000017560	ENSLOCP00000018227	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	OTU deubiquitinase 7A.	0.517
LOC102682818	W5MIV7_LEPOC	ENSLOCP00000017560	ENSLOCP00000008316	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Death domain-containing protein.	0.591
LOC102682818	W5MRP9_LEPOC	ENSLOCP00000017560	ENSLOCP00000011058	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	OTU deubiquitinase 7B.	0.517
LOC102682818	W5NEC4_LEPOC	ENSLOCP00000017560	ENSLOCP00000018983	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Tumor necrosis factor, alpha-induced protein 3.	0.520
LOC102682818	plekhg5	ENSLOCP00000017560	ENSLOCP00000003345	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Pleckstrin homology domain containing, family G (with RhoGef domain) member 5a.	0.583
LOC102682818	tnip1	ENSLOCP00000017560	ENSLOCP00000014500	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TNFAIP3 interacting protein 1.	0.624
LOC102682818	vcpip1	ENSLOCP00000017560	ENSLOCP00000005628	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Valosin containing protein (p97)/p47 complex interacting protein 1.	0.517
LOC102682818	zranb1	ENSLOCP00000017560	ENSLOCP00000009701	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Zinc finger, RAN-binding domain containing 1b.	0.517
LOC107077521	LOC102682818	ENSLOCP00000003066	ENSLOCP00000017560	Uncharacterized protein.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.517
LOC107077521	W5MIV7_LEPOC	ENSLOCP00000003066	ENSLOCP00000008316	Uncharacterized protein.	Death domain-containing protein.	0.480
LOC107077521	W5NEC4_LEPOC	ENSLOCP00000003066	ENSLOCP00000018983	Uncharacterized protein.	Tumor necrosis factor, alpha-induced protein 3.	0.741
LOC107077521	optn	ENSLOCP00000003066	ENSLOCP00000019349	Uncharacterized protein.	Optineurin.	0.517
LOC107077521	plekhg5	ENSLOCP00000003066	ENSLOCP00000003345	Uncharacterized protein.	Pleckstrin homology domain containing, family G (with RhoGef domain) member 5a.	0.480
LOC107077521	tnip1	ENSLOCP00000003066	ENSLOCP00000014500	Uncharacterized protein.	TNFAIP3 interacting protein 1.	0.628
OTUD7A	LOC102682818	ENSLOCP00000018227	ENSLOCP00000017560	OTU deubiquitinase 7A.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.517
OTUD7A	W5MIV7_LEPOC	ENSLOCP00000018227	ENSLOCP00000008316	OTU deubiquitinase 7A.	Death domain-containing protein.	0.580
OTUD7A	optn	ENSLOCP00000018227	ENSLOCP00000019349	OTU deubiquitinase 7A.	Optineurin.	0.517
OTUD7A	plekhg5	ENSLOCP00000018227	ENSLOCP00000003345	OTU deubiquitinase 7A.	Pleckstrin homology domain containing, family G (with RhoGef domain) member 5a.	0.495
OTUD7A	tnip1	ENSLOCP00000018227	ENSLOCP00000014500	OTU deubiquitinase 7A.	TNFAIP3 interacting protein 1.	0.628