STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctnna1Catenin (cadherin-associated protein), alpha 1. (908 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.957
LOC102695806
Junction plakoglobin b.
   
 0.934
cdh5
Cadherin 5; Cadherins are calcium-dependent cell adhesion proteins.
    
 0.854
W5MAE7_LEPOC
Vinculin a.
    
0.836
W5MAG4_LEPOC
Uncharacterized protein.
    
 0.836
cdh1
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
    
 0.836
W5MC12_LEPOC
Uncharacterized protein.
    
 0.836
cdh13
Cadherin 13, H-cadherin (heart).
    
 0.814
CDH12
Cadherin 12; Cadherins are calcium-dependent cell adhesion proteins.
    
  0.806
W5NFI2_LEPOC
Afadin, adherens junction formation factor a.
    
 0.806
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.