STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zfand1Zinc finger, AN1-type domain 1. (271 aa)    
Predicted Functional Partners:
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.736
LOC102686545
Zgc:136908; Belongs to the AAA ATPase family.
    
 
 0.736
SPATA5
Spermatogenesis associated 5.
    
 
 0.695
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.695
nsfl1c
NSFL1 (p97) cofactor (p47).
    
   0.645
rps27a
Ribosomal protein S27a.
    
 
 0.613
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 
 0.607
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 
 0.607
psmd6
Proteasome 26S subunit, non-ATPase 6.
   
 
 0.579
faap100
Si:dkey-57h18.1.
    
   0.572
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.