STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smdt1Single-pass membrane protein with aspartate-rich tail 1b. (99 aa)    
Predicted Functional Partners:
micu1
Mitochondrial calcium uptake 1.
    
 0.999
W5M0W0_LEPOC
Mitochondrial calcium uptake 2.
    
 0.993
mcu
Mitochondrial calcium uniporter.
    
 0.986
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 0.986
micu3
Mitochondrial calcium uptake family, member 3b.
     
 0.936
edf1
Endothelial differentiation-related factor 1.
   
    0.796
W5LYT8_LEPOC
Si:ch1073-174d20.2.
     
 0.777
afg3l2
AFG3-like AAA ATPase 2.
     
 0.777
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
     
 0.776
maip1
Matrix AAA peptidase interacting protein 1.
     
 0.773
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.