STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmotRNA methyltransferase O. (463 aa)    
Predicted Functional Partners:
tpi1
Triosephosphate isomerase.
    
  0.856
tyms
Thymidylate synthetase.
    
  0.852
dtymk
Deoxythymidylate kinase (thymidylate kinase).
    
  0.794
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
    
  0.794
cdadc1
Cytidine and dCMP deaminase domain containing 1.
  
 
  0.686
cep44
Centrosomal protein 44.
  
 
  0.677
W5N8A4_LEPOC
dCMP deaminase.
  
 
  0.677
W5NJ40_LEPOC
Epoxide hydrolase 2, cytoplasmic.
  
 
  0.592
nanp
N-acetylneuraminic acid phosphatase.
  
 
  0.563
FAM174A
Family with sequence similarity 174 member A.
      
 0.538
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.