STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc186Si:ch211-225b10.4. (911 aa)    
Predicted Functional Partners:
W5M2N5_LEPOC
VPS51 subunit of GARP complex.
     
 0.643
vps54
VPS54 subunit of GARP complex.
     
 0.643
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.590
W5MXT9_LEPOC
VPS50 EARP/GARPII complex subunit.
      
 0.582
W5MW92_LEPOC
Uncharacterized protein.
      
 0.577
W5LZP2_LEPOC
RAB, member RAS oncogene family-like 6b.
    
 
 0.575
tmf1
TATA element modulatory factor 1.
   
 
  0.562
rundc1
RUN domain containing 1.
      
 0.549
cep350
Centrosomal protein 350.
   
    0.538
ccdc22
Coiled-coil domain containing 22.
      
 0.495
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.