STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FCHSD1FCH and double SH3 domains 1. (738 aa)    
Predicted Functional Partners:
itsn2
Intersectin 2b.
   
0.929
itsn1
Intersectin 1 (SH3 domain protein).
   
0.832
W5NAX1_LEPOC
WASP actin nucleation promoting factor b.
   
 0.712
wasl
WASP like actin nucleation promoting factor b.
   
 0.712
gas7
Growth arrest-specific 7a.
    
 0.693
tsen2
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
   0.682
W5N0V1_LEPOC
Si:dkey-280e21.3.
   
 0.674
W5N4F9_LEPOC
PDZ domain containing 7a.
    
   0.671
W5NAP8_LEPOC
NCK interacting protein with SH3 domain.
    
 
 0.601
snx16
Sorting nexin 16.
    
 
 0.496
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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