STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N2L0_LEPOCHeparanase. (541 aa)    
Predicted Functional Partners:
ids
Iduronate 2-sulfatase.
     
 0.862
hpse2
Heparanase 2.
  
  
 
0.861
sdc1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.810
sdc3
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.572
sdc4
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.566
sulf2
Extracellular sulfatase.
     
 0.458
sulf1
Sulfatase 1.
     
 0.454
W5ND35_LEPOC
Glypican 4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
     
 0.453
W5M153_LEPOC
Heparan sulfate proteoglycan 2.
     
 0.431
sts
Steroid sulfatase (microsomal), isozyme S.
     
 0.415
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.