STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c9orf72Zgc:100846. (461 aa)    
Predicted Functional Partners:
smcr8
Smith-Magenis syndrome chromosome region, candidate 8a.
    
 0.995
wdr41
WD repeat domain 41.
    
 0.995
lmln
Leishmanolysin-like peptidase.
    
 0.976
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
  
 
 0.957
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.935
ulk1
Unc-51 like autophagy activating kinase 1a.
    
 0.935
rb1cc1
RB1-inducible coiled-coil 1.
    
 0.922
rab39b
RAB39B, member RAS oncogene family b.
    
 0.919
W5NNT4_LEPOC
Autophagy related 101.
    
 0.913
LOC102684782
Zgc:171927.
    
 0.895
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.