W5N3A1_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5N3A1_LEPOC

3'-5' exonuclease domain-containing protein. (386 aa)

Predicted Functional Partners:

LOC102690361

0.826

dynll1

0.826

LOC107076389

0.772

BICD2

0.772

W5NB07_LEPOC

0.772

bicd1

0.772

W5NMU1_LEPOC

0.726

ZNF462

0.590

W5M0P2_LEPOC

0.588

fkbp6

0.579

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BICD2	LOC102690361	ENSLOCP00000017369	ENSLOCP00000007229	Bicaudal D homolog 2 (Drosophila).	Dynein light chain.	0.555
BICD2	W5N3A1_LEPOC	ENSLOCP00000017369	ENSLOCP00000015110	Bicaudal D homolog 2 (Drosophila).	3'-5' exonuclease domain-containing protein.	0.772
BICD2	W5NMU1_LEPOC	ENSLOCP00000017369	ENSLOCP00000021950	Bicaudal D homolog 2 (Drosophila).	Dynein light chain.	0.478
BICD2	dynll1	ENSLOCP00000017369	ENSLOCP00000010594	Bicaudal D homolog 2 (Drosophila).	Dynein light chain.	0.555
LOC102690361	BICD2	ENSLOCP00000007229	ENSLOCP00000017369	Dynein light chain.	Bicaudal D homolog 2 (Drosophila).	0.555
LOC102690361	LOC107076389	ENSLOCP00000007229	ENSLOCP00000017028	Dynein light chain.	Uncharacterized protein.	0.555
LOC102690361	W5N3A1_LEPOC	ENSLOCP00000007229	ENSLOCP00000015110	Dynein light chain.	3'-5' exonuclease domain-containing protein.	0.826
LOC102690361	W5NB07_LEPOC	ENSLOCP00000007229	ENSLOCP00000017816	Dynein light chain.	Zgc:162200.	0.555
LOC102690361	bicd1	ENSLOCP00000007229	ENSLOCP00000020522	Dynein light chain.	Bicaudal D homolog 1a.	0.555
LOC102690361	dynll1	ENSLOCP00000007229	ENSLOCP00000010594	Dynein light chain.	Dynein light chain.	0.925
LOC107076389	LOC102690361	ENSLOCP00000017028	ENSLOCP00000007229	Uncharacterized protein.	Dynein light chain.	0.555
LOC107076389	W5N3A1_LEPOC	ENSLOCP00000017028	ENSLOCP00000015110	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.772
LOC107076389	W5NMU1_LEPOC	ENSLOCP00000017028	ENSLOCP00000021950	Uncharacterized protein.	Dynein light chain.	0.478
LOC107076389	dynll1	ENSLOCP00000017028	ENSLOCP00000010594	Uncharacterized protein.	Dynein light chain.	0.555
W5M0P2_LEPOC	W5N3A1_LEPOC	ENSLOCP00000001949	ENSLOCP00000015110	Tudor domain containing 12.	3'-5' exonuclease domain-containing protein.	0.588
W5M0P2_LEPOC	fkbp6	ENSLOCP00000001949	ENSLOCP00000001068	Tudor domain containing 12.	Peptidylprolyl isomerase.	0.557
W5N3A1_LEPOC	BICD2	ENSLOCP00000015110	ENSLOCP00000017369	3'-5' exonuclease domain-containing protein.	Bicaudal D homolog 2 (Drosophila).	0.772
W5N3A1_LEPOC	LOC102690361	ENSLOCP00000015110	ENSLOCP00000007229	3'-5' exonuclease domain-containing protein.	Dynein light chain.	0.826
W5N3A1_LEPOC	LOC107076389	ENSLOCP00000015110	ENSLOCP00000017028	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.772
W5N3A1_LEPOC	W5M0P2_LEPOC	ENSLOCP00000015110	ENSLOCP00000001949	3'-5' exonuclease domain-containing protein.	Tudor domain containing 12.	0.588