STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nom1Nucleolar protein with MIF4G domain 1. (862 aa)    
Predicted Functional Partners:
W5M226_LEPOC
RNA helicase.
   
 
 0.989
W5MYW8_LEPOC
WD repeat domain 3.
   
   0.987
NGDN
Neuroguidin.
   
   0.981
W5LZV8_LEPOC
UTP3 small subunit processome component.
   
 
 0.978
nat10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.977
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 
 0.977
W5NGB6_LEPOC
ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).
   
   0.974
noc4l
Nucleolar complex associated 4 homolog.
   
   0.973
rrp36
Ribosomal RNA processing 36.
   
 
 0.973
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
   0.971
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.