STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox9SRY-box transcription factor 9a. (479 aa)    
Predicted Functional Partners:
runx2
RUNX family transcription factor 2a.
   
 0.740
LOC102683363
Doublesex and mab-3 related transcription factor 1.
    
 0.717
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.704
egr2
Early growth response 2b.
    
 0.695
runx3
Runt-related transcription factor.
   
 0.685
runx1
Runt-related transcription factor.
   
 0.685
gata4
GATA binding protein 4.
    
 0.682
LOC102695806
Junction plakoglobin b.
    
 0.649
AMHR2
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 
 0.607
nr5a1
Nuclear receptor subfamily 5, group A, member 1a.
    
 0.599
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.