STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N4I5_LEPOCTetratricopeptide repeat domain 25. (503 aa)    
Predicted Functional Partners:
leo1
Uncharacterized protein.
    
 0.934
armc4
Armadillo repeat containing 4.
  
 
 0.901
ak9
Adenylate kinase 9.
   
 0.881
ccdc151
Coiled-coil domain containing 151.
   
 
 0.861
efcab1
EF-hand calcium binding domain 1.
    
 0.857
cfap53
Cilia and flagella associated protein 53.
   
 0.768
cfap45
Cilia and flagella associated protein 45.
    
 
 0.767
bbs9
Bardet-Biedl syndrome 9.
    
 0.764
W5N1R4_LEPOC
Armadillo repeat containing 3.
   
 
 0.761
cfap52
Cilia and flagella associated protein 52.
   
 0.757
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.