STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marchf11Membrane-associated ring finger (C3HC4) 11. (341 aa)    
Predicted Functional Partners:
cnot2
CCR4-NOT transcription complex, subunit 2.
    
 
 0.684
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.520
ubxn8
UBX domain protein 8.
    
 
 0.520
faf2
Fas associated factor family member 2.
    
 
 0.520
W5MG05_LEPOC
Membrane-associated ring finger (C3HC4) 7.
      
0.499
SPATA5
Spermatogenesis associated 5.
    
 
 0.425
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.425
LOC102686545
Zgc:136908; Belongs to the AAA ATPase family.
    
 
 0.425
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.425
vhl
Von Hippel-Lindau tumor suppressor.
   
 
  0.423
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.