STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N5C0_LEPOCRho GTPase activating protein 23a. (1489 aa)    
Predicted Functional Partners:
ccdc85c
Coiled-coil domain containing 85C, b.
    
 
 0.614
W5NGY0_LEPOC
Coiled-coil domain containing 85A.
    
 
 0.610
rnd3
Rho family GTPase 3b.
    
 0.600
rnd1
Rho family GTPase 1a.
    
 0.600
rhof
Ras homolog family member F.
    
 0.583
cdc42
Cell division cycle 42.
    
 0.562
LOC102698253
Cell division cycle 42, like.
    
 0.562
LOC107076601
Uncharacterized protein.
      
 0.562
ccdc51
Coiled-coil domain containing 51.
      
 0.546
LOC102690743
Ras homolog gene family, member Gc.
    
 0.537
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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