STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102682395ORM1-like protein; Negative regulator of sphingolipid synthesis. (162 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
    
 
 0.895
sptssa
Serine palmitoyltransferase, small subunit A.
    
 0.870
sptlc2
Serine palmitoyltransferase, long chain base subunit 2a.
    
 0.858
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
    
 0.858
ism1
Isthmin 1.
    
 
 0.704
lrrc3c
Leucine rich repeat containing 3Ca.
      
 0.651
W5NLI1_LEPOC
Serine palmitoyltransferase, small subunit B.
     
 0.630
LOC102685240
5-aminolevulinate synthase.
    
 
 0.596
alas1
5-aminolevulinate synthase.
    
 
 0.596
W5NB93_LEPOC
5-aminolevulinate synthase.
    
 
 0.596
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (24%) [HD]