STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N5V1_LEPOCActin binding LIM protein 1a. (815 aa)    
Predicted Functional Partners:
ablim2
Actin binding LIM protein family, member 2.
    
 
0.823
cdc42
Cell division cycle 42.
     
 0.792
W5MST6_LEPOC
Actin binding LIM protein family, member 3.
     
0.787
LOC102698253
Cell division cycle 42, like.
     
 0.648
rac1
Rac family small GTPase 1b.
     
 0.648
RAC3
Rac family small GTPase 3.
     
 0.648
W5N114_LEPOC
Adducin 1 (alpha).
   
 0.587
W5N3N2_LEPOC
Adducin 3 (gamma) a.
   
 0.587
W5NDY9_LEPOC
Adducin 2 (beta).
   
 0.587
lrrc17
Leucine rich repeat containing 17.
      
 0.549
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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