STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp8Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family. (1075 aa)    
Predicted Functional Partners:
rnf41
Ring finger protein 41.
    
 0.989
rps27a
Ribosomal protein S27a.
    
 0.971
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.962
stam2
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.
    
 0.936
W5N983_LEPOC
Hepatocyte growth factor-regulated tyrosine kinase substrate.
   
 0.935
stam
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
    
 0.909
prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
     
 0.889
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
    
 0.821
W5M7P2_LEPOC
Erb-b2 receptor tyrosine kinase 3b.
    
 0.779
W5MAN3_LEPOC
Receptor protein-tyrosine kinase.
    
 0.779
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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