STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col1a1Collagen, type I, alpha 1b. (885 aa)    
Predicted Functional Partners:
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.872
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.872
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.870
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.868
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
  0.867
itgb4
Integrin beta.
    
 0.867
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
    
 0.863
itga6
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
    
 0.863
itga3
Integrin, alpha 3a; Belongs to the integrin alpha chain family.
    
 0.863
W5MH20_LEPOC
Integrin, alpha 10; Belongs to the integrin alpha chain family.
     
 0.862
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.