STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N615_LEPOCBTB (POZ) domain containing 17b. (461 aa)    
Predicted Functional Partners:
bbs9
Bardet-Biedl syndrome 9.
    
 0.574
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.572
ubxn7
UBX domain protein 7.
    
  0.568
ttc13
Tetratricopeptide repeat domain 13.
    
 0.566
W5MWM9_LEPOC
Tetratricopeptide repeat domain 8.
    
  0.553
bbs7
Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.
    
 0.549
W5N2W4_LEPOC
NBR1 autophagy cargo receptor b.
    
 0.528
cul3
Cullin 3a; Belongs to the cullin family.
    
 0.501
W5MU13_LEPOC
CDK2 associated cullin domain 1; Belongs to the cullin family.
    
 0.501
cul1
Cullin 1a; Belongs to the cullin family.
    
 0.501
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.