STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubr7Ubiquitin protein ligase E3 component n-recognin 7. (437 aa)    
Predicted Functional Partners:
nasp
Nuclear autoantigenic sperm protein (histone-binding).
   
 
 0.639
UNC79
Unc-79 homolog, NALCN channel complex subunit.
 
    
 0.632
rnf181
Ring finger protein 181.
      
 0.558
W5MNK9_LEPOC
Thyroid hormone receptor interactor 12.
      
 0.536
chaf1b
Chromatin assembly factor 1, subunit B.
      
 0.470
ube2k
Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.434
dym
Dymeclin.
      
 0.424
ttc13
Tetratricopeptide repeat domain 13.
      
 0.416
btbd7
BTB (POZ) domain containing 7.
      
 0.403
LOC102690794
Nuclear envelope integral membrane protein 1.
      
 0.400
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.