STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N656_LEPOCHistone PARylation factor 1. (282 aa)    
Predicted Functional Partners:
W5LVZ4_LEPOC
Poly [ADP-ribose] polymerase.
    
 
 0.956
parp1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
    
 
 0.947
parp3
Poly [ADP-ribose] polymerase.
    
 
 0.846
W5MFH8_LEPOC
Von Willebrand factor A domain containing 5B2.
    
 
 0.709
W5MXX0_LEPOC
Poly [ADP-ribose] polymerase.
    
 
 0.709
LOC102694187
Histone H2A; Belongs to the histone H2A family.
    
 
 0.600
W5MJK0_LEPOC
Histone H2B; Belongs to the histone H2B family.
    
   0.541
W5NLL5_LEPOC
Histone H2B; Belongs to the histone H2B family.
    
   0.541
cwc22
CWC22 spliceosome associated protein homolog.
      
 0.506
LOC102698545
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
    
 
 0.484
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.