STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYCP2LSynaptonemal complex protein 2 like. (777 aa)    
Predicted Functional Partners:
LOC102683235
Synaptonemal complex protein 3.
    
 0.684
ndufs5
NADH:ubiquinone oxidoreductase subunit S5.
      
 0.628
W5NJS5_LEPOC
Glutamate-cysteine ligase, catalytic subunit.
      
 0.610
bag2
BCL2 associated athanogene 2.
      
 0.600
ICK
Intestinal cell kinase.
      
 0.585
GCM1
Glial cells missing transcription factor 1.
      
 0.579
elovl2
Elongation of very long chain fatty acids protein 2; Catalyzes the first and rate-limiting reaction of the four reactions that constitute the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process allows the addition of 2 carbons to the chain of long- and very long-chain fatty acids (VLCFAs) per cycle. Acts specifically toward polyunsaturated acyl-CoA with the higher activity toward C20:4(n-6) acyl-CoA. Condensing enzyme that catalyzes the synthesis of polyunsaturated very long chain fatty acid (C20- and C22-PUFA). May participate to the production [...]
      
 0.552
rfc5
Replication factor C (activator 1) 5.
      
 0.543
W5MXE6_LEPOC
Uncharacterized protein.
     
 0.534
W5LYJ4_LEPOC
Methenyltetrahydrofolate synthetase domain containing.
      
 0.519
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.