STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dtwd1DTW domain containing 1. (318 aa)    
Predicted Functional Partners:
ccdc85c
Coiled-coil domain containing 85C, b.
      
 0.585
mphosph10
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
      
 0.560
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
      
 0.559
W5MQW7_LEPOC
DTW domain containing 2.
      
 0.559
W5M7M7_LEPOC
Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.558
dus2
Dihydrouridine synthase 2.
      
 0.558
ebna1bp2
EBNA1 binding protein 2.
      
 0.506
dus4l
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
      
 0.503
W5MTS1_LEPOC
Cytochrome P450, family 1, subfamily D, polypeptide 1; Belongs to the cytochrome P450 family.
      
 0.416
spcs1
Signal peptidase complex subunit 1.
      
 0.412
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.