STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc4Zinc finger, CCHC domain containing 4. (507 aa)    
Predicted Functional Partners:
aasdh
Aminoadipate-semialdehyde dehydrogenase.
   
    0.841
W5MCA8_LEPOC
Nucleolar protein 6.
   
    0.808
pfdn6
Prefoldin subunit 6.
   
    0.777
med22
Mediator complex subunit 22.
   
    0.777
cog3
Component of oligomeric golgi complex 3.
   
    0.777
prpf38a
Pre-mRNA processing factor 38A.
   
    0.777
gpn3
GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.
   
    0.777
W5N159_LEPOC
MAX dimerization protein MGA a.
   
    0.777
mrpl2
Mitochondrial ribosomal protein L2.
   
    0.777
ints13
Integrator complex subunit 13.
   
    0.685
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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