STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kctd6Potassium channel tetramerization domain containing 6a. (237 aa)    
Predicted Functional Partners:
cul3
Cullin 3a; Belongs to the cullin family.
    
 0.952
ube2f
Ubiquitin-conjugating enzyme E2F (putative); Belongs to the ubiquitin-conjugating enzyme family.
    
  0.721
btbd6
BTB (POZ) domain containing 6b.
    
 0.663
kbtbd13
Kelch repeat and BTB (POZ) domain containing 13.
     
 0.622
W5M0C9_LEPOC
Citron rho-interacting serine/threonine kinase a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
      
 0.594
spryd3
SPRY domain containing 3.
      
 0.591
fbxo45
F-box protein 45.
      
 0.586
gan
Gigaxonin.
    
  0.582
klhl22
Kelch-like family member 22.
    
  0.582
kbtbd8
Kelch repeat and BTB (POZ) domain containing 8.
    
  0.582
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.