Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LOC102685670 | W5N6S6_LEPOC | ENSLOCP00000009622 | ENSLOCP00000016335 | Selenoprotein J. | Plac8 onzin related protein 2. | 0.499 |
LOC102685670 | med1 | ENSLOCP00000009622 | ENSLOCP00000015717 | Selenoprotein J. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.482 |
LOC102685670 | rpl9 | ENSLOCP00000009622 | ENSLOCP00000016020 | Selenoprotein J. | Ribosomal protein L9. | 0.482 |
W5M717_LEPOC | W5N6S6_LEPOC | ENSLOCP00000004175 | ENSLOCP00000016335 | Nuclear receptor corepressor 1. | Plac8 onzin related protein 2. | 0.499 |
W5M717_LEPOC | med1 | ENSLOCP00000004175 | ENSLOCP00000015717 | Nuclear receptor corepressor 1. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.672 |
W5M717_LEPOC | rpl9 | ENSLOCP00000004175 | ENSLOCP00000016020 | Nuclear receptor corepressor 1. | Ribosomal protein L9. | 0.482 |
W5MFZ2_LEPOC | W5N6S6_LEPOC | ENSLOCP00000007301 | ENSLOCP00000016335 | Nuclear receptor corepressor 2. | Plac8 onzin related protein 2. | 0.499 |
W5MFZ2_LEPOC | med1 | ENSLOCP00000007301 | ENSLOCP00000015717 | Nuclear receptor corepressor 2. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.672 |
W5MFZ2_LEPOC | rpl9 | ENSLOCP00000007301 | ENSLOCP00000016020 | Nuclear receptor corepressor 2. | Ribosomal protein L9. | 0.482 |
W5N6S6_LEPOC | LOC102685670 | ENSLOCP00000016335 | ENSLOCP00000009622 | Plac8 onzin related protein 2. | Selenoprotein J. | 0.499 |
W5N6S6_LEPOC | W5M717_LEPOC | ENSLOCP00000016335 | ENSLOCP00000004175 | Plac8 onzin related protein 2. | Nuclear receptor corepressor 1. | 0.499 |
W5N6S6_LEPOC | W5MFZ2_LEPOC | ENSLOCP00000016335 | ENSLOCP00000007301 | Plac8 onzin related protein 2. | Nuclear receptor corepressor 2. | 0.499 |
W5N6S6_LEPOC | hsp90b1 | ENSLOCP00000016335 | ENSLOCP00000018492 | Plac8 onzin related protein 2. | Heat shock protein 90, beta (grp94), member 1. | 0.558 |
W5N6S6_LEPOC | med1 | ENSLOCP00000016335 | ENSLOCP00000015717 | Plac8 onzin related protein 2. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.499 |
W5N6S6_LEPOC | med14 | ENSLOCP00000016335 | ENSLOCP00000002719 | Plac8 onzin related protein 2. | Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.502 |
W5N6S6_LEPOC | med17 | ENSLOCP00000016335 | ENSLOCP00000008991 | Plac8 onzin related protein 2. | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.490 |
W5N6S6_LEPOC | ppargc1a | ENSLOCP00000016335 | ENSLOCP00000015207 | Plac8 onzin related protein 2. | Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha. | 0.476 |
W5N6S6_LEPOC | rbm22 | ENSLOCP00000016335 | ENSLOCP00000013477 | Plac8 onzin related protein 2. | RNA binding motif protein 22. | 0.476 |
W5N6S6_LEPOC | rpl9 | ENSLOCP00000016335 | ENSLOCP00000016020 | Plac8 onzin related protein 2. | Ribosomal protein L9. | 0.499 |
hsp90b1 | W5N6S6_LEPOC | ENSLOCP00000018492 | ENSLOCP00000016335 | Heat shock protein 90, beta (grp94), member 1. | Plac8 onzin related protein 2. | 0.558 |
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