STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N704_LEPOCArfGAP with coiled-coil, ankyrin repeat and PH domains 1. (763 aa)    
Predicted Functional Partners:
rab35
RAB35, member RAS oncogene family b.
    
 
 0.817
W5N6Z1_LEPOC
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.
    
 
0.712
W5NEG4_LEPOC
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
    
 
0.712
arfgap1
ADP-ribosylation factor GTPase activating protein 1.
   
0.702
W5N772_LEPOC
Leucine-rich repeats and calponin homology (CH) domain containing 4.
   
  
 0.675
arf6
ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family.
    
 0.631
ankrd46
Ankyrin repeat domain 46a.
    
 
 0.617
arfgap2
ADP-ribosylation factor GTPase activating protein 2.
    
0.591
W5NDB7_LEPOC
ADP-ribosylation factor GTPase activating protein 3.
    
0.591
IFT27
Intraflagellar transport 27.
    
 
 0.590
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.