STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAMP2Vesicle associated membrane protein 2. (124 aa)    
Predicted Functional Partners:
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.986
itsn2
Intersectin 2b.
     
 0.981
snap23
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.977
gak
Cyclin G associated kinase.
   
 
  0.976
LOC102685791
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.963
W5MUY6_LEPOC
Syntaxin 6; Belongs to the syntaxin family.
    
 0.962
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.962
stx2
Syntaxin 2b; Belongs to the syntaxin family.
    
 0.960
stx4
Syntaxin 4; Belongs to the syntaxin family.
    
 0.956
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.955
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.