STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cul1Cullin 1a; Belongs to the cullin family. (777 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.999
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
    
 0.999
ubxn7
UBX domain protein 7.
   
 0.996
ube2f
Ubiquitin-conjugating enzyme E2F (putative); Belongs to the ubiquitin-conjugating enzyme family.
    
 0.987
fbxl17
F-box and leucine-rich repeat protein 17.
    
 0.986
nfkbia
Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.
    
 0.984
cops5
COP9 signalosome subunit 5.
   
 0.983
cand2
Cullin-associated and neddylation-dissociated 2 (putative).
   
 0.979
cand1
Cullin-associated and neddylation-dissociated 1.
   
 0.979
W5MTY5_LEPOC
F-box and WD repeat domain containing 11.
    
 0.973
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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