STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pkd2Polycystic kidney disease 2. (964 aa)    
Predicted Functional Partners:
W5M8L2_LEPOC
Uncharacterized protein.
    
0.963
PKD1
Polycystin 1, transient receptor potential channel interacting.
    
0.897
LOC102685258
Polycystic kidney disease 1b.
    
0.897
W5MAE3_LEPOC
PLAT domain-containing protein.
 
  
 0.757
PKDREJ
Polycystin family receptor for egg jelly.
    
0.750
exoc5
Exocyst complex component 5.
     
 0.727
exoc4
Exocyst complex component 4.
     
 0.618
exoc8
Exocyst complex component 8.
     
 0.603
exoc1
Exocyst complex component 1.
     
 0.602
ccdc25
Coiled-coil domain containing 25.
    
 0.594
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.