STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N7Y2_LEPOCBromodomain PHD finger transcription factor. (3079 aa)    
Predicted Functional Partners:
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 
 0.926
smarca1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.
   
 
 0.926
rbbp4
Retinoblastoma binding protein 4.
    
 
 0.867
rbbp7
Retinoblastoma binding protein 4, like.
    
 
 0.867
W5N4U2_LEPOC
Nipped-B protein.
   
    0.844
hells
Helicase, lymphoid specific.
   
 
 0.843
chd1l
Chromodomain helicase DNA binding protein 1-like.
   
 
 0.843
wdr73
WD repeat domain 73.
    
 
 0.830
clg2h17orf49
Zgc:92664.
    
 0.823
rsf1
Remodeling and spacing factor 1b, tandem duplicate 1.
   
 
 0.812
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.