STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102695202Zgc:163098. (949 aa)    
Predicted Functional Partners:
rbm17
RNA binding motif protein 17.
   
 0.962
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.941
sf3a2
Splicing factor 3a, subunit 2.
    
 0.888
sf3b1
Splicing factor 3b, subunit 1.
   
 0.870
dhx15
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 0.832
sf3a1
Splicing factor 3a, subunit 1.
   
 0.824
W5MVP0_LEPOC
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.824
thoc2
THO complex 2.
   
    0.810
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.782
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.780
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.