STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102684993Arrestin_C domain-containing protein. (318 aa)    
Predicted Functional Partners:
W5N793_LEPOC
Thioredoxin; Belongs to the thioredoxin family.
    
 0.774
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.695
nedd4
E3 ubiquitin-protein ligase.
    
 
 0.695
txn2
Thioredoxin 2.
    
 0.655
W5MTQ7_LEPOC
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.640
W5N0B4_LEPOC
Uncharacterized protein; Belongs to the NDK family.
    
 0.640
HECW2
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2a.
    
 
 0.521
hecw1
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1b.
    
 
 0.521
W5LVP7_LEPOC
NACHT domain-containing protein.
    
 0.511
W5LW95_LEPOC
NACHT domain-containing protein.
    
 0.511
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.