STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
helzHelicase with zinc finger. (1927 aa)    
Predicted Functional Partners:
cnot1
CCR4-NOT transcription complex, subunit 1.
   
 
 0.695
phf3
PHD finger protein 3.
   
  
 0.688
W5M4U9_LEPOC
Ring finger and CCCH-type domains 2.
   
 
 0.682
smyd3
SET and MYND domain containing 3.
    
 
 0.652
patl1
PAT1 homolog 1, processing body mRNA decay factor.
    
 
 0.623
LOC102690117
Opticin.
      
 0.559
piwil1
Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family.
    
 0.546
piwil2
Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.
    
 0.546
smyd2
SET and MYND domain containing 2a.
    
 
 0.516
W5N0P4_LEPOC
E1A binding protein p300 a.
   
 
 0.483
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.