STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clg10h17orf75Zgc:153240. (396 aa)    
Predicted Functional Partners:
vps25
Vacuolar protein sorting 25 homolog.
   
 0.985
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.980
vps36
Vacuolar protein sorting 36 homolog.
    
 0.979
chmp3
Charged multivesicular body protein 3.
    
 0.959
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
    
 0.953
vps4b
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
    
 0.953
W5LYE8_LEPOC
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
    
 0.921
chmp4b
Charged multivesicular body protein 4Ba.
    
 0.921
chmp4c
Charged multivesicular body protein 4C.
    
 0.921
chmp5
Charged multivesicular body protein 5a.
   
 0.920
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.