STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N8Y1_LEPOCTBC1 domain family, member 16. (786 aa)    
Predicted Functional Partners:
LOC102689166
RAB4B, member RAS oncogene family.
    
 0.726
rab4a
RAB4a, member RAS oncogene family.
    
 0.726
WDFY4
WDFY family member 4.
      
 0.614
dgke
Diacylglycerol kinase.
      
 0.589
tbc1d23
TBC1 domain family, member 23.
      
 0.539
wdr5
WD repeat domain 5.
      
 0.528
ppm1l
Protein phosphatase, Mg2+/Mn2+ dependent, 1La.
      
 0.495
rab2a
RAB2A, member RAS oncogene family.
    
 0.466
dnajc27
DnaJ (Hsp40) homolog, subfamily C, member 27.
    
  0.448
CARD14
Caspase recruitment domain family member 14.
      
 0.426
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.