STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N979_LEPOCCLN6 transmembrane ER protein a. (253 aa)    
Predicted Functional Partners:
W5N977_LEPOC
Calmodulin-like 4b.
 
  
  0.769
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.706
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.695
itgb4
Integrin beta.
   
 0.695
LOC102693234
Fras1 related extracellular matrix 1b.
   
 
  0.691
frem1
Fras1 related extracellular matrix 1a.
   
 
  0.691
cln5
CLN5 intracellular trafficking protein.
  
   
 0.689
W5LZU4_LEPOC
Tenascin C.
    
 0.685
tnr
Tenascin R (restrictin, janusin).
    
 0.685
TNN
Tenascin N.
   
 0.685
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.