STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
timp4TIMP metallopeptidase inhibitor 4, tandem duplicate 1. (219 aa)    
Predicted Functional Partners:
mmp15
Matrix metallopeptidase 15b.
    
 0.731
W5MHF2_LEPOC
Hemopexin; Binds heme and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation.
    
 0.690
W5MIU6_LEPOC
Matrix metallopeptidase 9.
    
 0.667
W5MSV8_LEPOC
Uncharacterized protein.
    
 0.667
mmp28
Matrix metallopeptidase 28.
    
 0.608
mmp24
Matrix metallopeptidase 24.
    
 0.543
mmp13
Matrix metallopeptidase 13b.
    
 0.542
W5LYY3_LEPOC
Matrix metallopeptidase 13a.
    
 0.542
MMP20
Matrix metallopeptidase 20.
    
 0.542
LOC102685179
Matrix metallopeptidase 20b (enamelysin).
    
 0.542
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.