STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N9A1_LEPOCTNF superfamily member 12; Belongs to the tumor necrosis factor family. (261 aa)    
Predicted Functional Partners:
tnfsf11
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
     
 0.862
tnfsf13b
TNF superfamily member 13b; Belongs to the tumor necrosis factor family.
   
 0.838
LOC102682373
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
   
 0.755
CD40LG
CD40 ligand; Belongs to the tumor necrosis factor family.
     
 0.648
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.643
TRAF5
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.643
W5NDC8_LEPOC
RNA binding motif protein X-linked.
      
 0.619
LOC107075725
TNFR-Cys domain-containing protein.
   
 
 0.618
TNFRSF11B
TNF receptor superfamily member 11b.
   
 
 0.612
W5MM91_LEPOC
Protein kinase domain-containing protein.
     
 0.582
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.