STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5N9E2_LEPOCLON peptidase N-terminal domain and ring finger 1, like. (646 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
  0.787
tp53bp1
Tumor protein p53 binding protein, 1.
    
 0.687
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.684
ube2n
Ubiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.678
W5MNK9_LEPOC
Thyroid hormone receptor interactor 12.
    
 0.653
paxip1
PAX interacting (with transcription-activation domain) protein 1.
   
 0.645
W5M2L8_LEPOC
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.636
bard1
BRCA1 associated RING domain 1.
    
 0.636
W5MVF4_LEPOC
Uncharacterized protein.
    
  0.605
W5N048_LEPOC
Uncharacterized protein.
    
 0.600
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.