STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc9Tetratricopeptide repeat domain 9. (241 aa)    
Predicted Functional Partners:
aarsd1
Alanyl-tRNA synthetase domain containing 1.
   
 0.705
W5MKE7_LEPOC
Prostaglandin E synthase 3b (cytosolic).
   
 0.683
RYR3
Ryanodine receptor 3.
    
 0.667
W5NAB3_LEPOC
Ryanodine receptor 1b (skeletal).
    
 0.667
W5NIQ4_LEPOC
Ryanodine receptor 2b (cardiac).
    
 0.667
LOC102693534
Uncharacterized protein.
   
 0.609
LOC102697661
Uncharacterized protein.
   
 0.609
W5M4B9_LEPOC
TNF receptor-associated protein 1.
   
 0.609
LOC102697582
TSC complex subunit 1a.
   
 0.609
hsp90aa1
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.
   
 0.609
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.