STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scfd2Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family. (676 aa)    
Predicted Functional Partners:
zw10
Zw10 kinetochore protein.
    
 
 0.901
W5NEK9_LEPOC
RAD50 interactor 1.
   
 
 0.891
stx18
Syntaxin 18.
    
 
 0.888
nbas
Neuroblastoma amplified sequence.
    
 
 0.850
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
   
   0.789
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.731
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma a.
    
   0.668
sec22b
SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.
   
   0.664
clg19h19orf25
Si:ch73-238c9.1.
    
   0.571
W5MXR6_LEPOC
Si:ch73-234b20.5.
    
   0.528
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.