LOC102682818 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102682818

Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (653 aa)

Predicted Functional Partners:

chuk

0.985

W5NF13_LEPOC

0.980

TMEM189-UBE2V1

0.977

W5MRM7_LEPOC

0.965

tab3

0.956

W5NK53_LEPOC

0.956

W5N321_LEPOC

0.943

tbk1

0.943

tank

0.931

W5LYQ5_LEPOC

0.929

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102682818	TMEM189-UBE2V1	ENSLOCP00000017560	ENSLOCP00000002660	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TMEM189-UBE2V1 readthrough.	0.977
LOC102682818	W5LYQ5_LEPOC	ENSLOCP00000017560	ENSLOCP00000001262	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.929
LOC102682818	W5MRM7_LEPOC	ENSLOCP00000017560	ENSLOCP00000011036	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	CARD domain-containing protein.	0.965
LOC102682818	W5N321_LEPOC	ENSLOCP00000017560	ENSLOCP00000015030	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Inhibitor of nuclear factor kappa B kinase subunit epsilon.	0.943
LOC102682818	W5NF13_LEPOC	ENSLOCP00000017560	ENSLOCP00000019222	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.980
LOC102682818	W5NK53_LEPOC	ENSLOCP00000017560	ENSLOCP00000021012	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.956
LOC102682818	chuk	ENSLOCP00000017560	ENSLOCP00000005304	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.985
LOC102682818	tab3	ENSLOCP00000017560	ENSLOCP00000012559	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.956
LOC102682818	tank	ENSLOCP00000017560	ENSLOCP00000010467	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TRAF family member-associated NFKB activator.	0.931
LOC102682818	tbk1	ENSLOCP00000017560	ENSLOCP00000020366	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	TANK-binding kinase 1.	0.943
TMEM189-UBE2V1	LOC102682818	ENSLOCP00000002660	ENSLOCP00000017560	TMEM189-UBE2V1 readthrough.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.977
TMEM189-UBE2V1	W5LYQ5_LEPOC	ENSLOCP00000002660	ENSLOCP00000001262	TMEM189-UBE2V1 readthrough.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.819
TMEM189-UBE2V1	W5MRM7_LEPOC	ENSLOCP00000002660	ENSLOCP00000011036	TMEM189-UBE2V1 readthrough.	CARD domain-containing protein.	0.983
TMEM189-UBE2V1	W5N321_LEPOC	ENSLOCP00000002660	ENSLOCP00000015030	TMEM189-UBE2V1 readthrough.	Inhibitor of nuclear factor kappa B kinase subunit epsilon.	0.793
TMEM189-UBE2V1	W5NF13_LEPOC	ENSLOCP00000002660	ENSLOCP00000019222	TMEM189-UBE2V1 readthrough.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.793
TMEM189-UBE2V1	W5NK53_LEPOC	ENSLOCP00000002660	ENSLOCP00000021012	TMEM189-UBE2V1 readthrough.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.987
TMEM189-UBE2V1	chuk	ENSLOCP00000002660	ENSLOCP00000005304	TMEM189-UBE2V1 readthrough.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.793
TMEM189-UBE2V1	tab3	ENSLOCP00000002660	ENSLOCP00000012559	TMEM189-UBE2V1 readthrough.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.987
TMEM189-UBE2V1	tbk1	ENSLOCP00000002660	ENSLOCP00000020366	TMEM189-UBE2V1 readthrough.	TANK-binding kinase 1.	0.793
W5LYQ5_LEPOC	LOC102682818	ENSLOCP00000001262	ENSLOCP00000017560	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.929