STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubl7Ubiquitin-like 7a (bone marrow stromal cell-derived). (391 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.992
itsn2
Intersectin 2b.
    
 0.982
W5N2W4_LEPOC
NBR1 autophagy cargo receptor b.
   
 0.970
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.957
TMEM189-UBE2V1
TMEM189-UBE2V1 readthrough.
   
 0.957
rps27a
Ribosomal protein S27a.
    
  0.946
W5MNK9_LEPOC
Thyroid hormone receptor interactor 12.
   
 0.923
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.921
traf7
TNF receptor-associated factor 7.
    
 0.920
ubxn7
UBX domain protein 7.
    
 0.908
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.