STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NAG5_LEPOCRNA binding motif protein 10. (443 aa)    
Predicted Functional Partners:
SUGP1
SURP and G-patch domain containing 1.
   
 0.810
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.763
dhx15
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 0.732
W5M226_LEPOC
RNA helicase.
    
 0.730
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 0.710
W5MCA8_LEPOC
Nucleolar protein 6.
    
 
 0.695
utp6
UTP6 small subunit processome component.
    
 
 0.693
gpkow
G patch domain and KOW motifs.
   
 
 0.686
W5MHR8_LEPOC
RNA binding motif protein 39a.
   
 0.683
rrp36
Ribosomal RNA processing 36.
   
   0.683
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.