Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LOC102685670 | W5N0P4_LEPOC | ENSLOCP00000009622 | ENSLOCP00000014203 | Selenoprotein J. | E1A binding protein p300 a. | 0.566 |
LOC102685670 | med1 | ENSLOCP00000009622 | ENSLOCP00000015717 | Selenoprotein J. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.482 |
LOC102685670 | nr2f2 | ENSLOCP00000009622 | ENSLOCP00000017729 | Selenoprotein J. | Nuclear receptor subfamily 2, group F, member 2. | 0.499 |
LOC102685670 | rpl9 | ENSLOCP00000009622 | ENSLOCP00000016020 | Selenoprotein J. | Ribosomal protein L9. | 0.482 |
W5M717_LEPOC | W5N0P4_LEPOC | ENSLOCP00000004175 | ENSLOCP00000014203 | Nuclear receptor corepressor 1. | E1A binding protein p300 a. | 0.764 |
W5M717_LEPOC | med1 | ENSLOCP00000004175 | ENSLOCP00000015717 | Nuclear receptor corepressor 1. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.672 |
W5M717_LEPOC | nr2f2 | ENSLOCP00000004175 | ENSLOCP00000017729 | Nuclear receptor corepressor 1. | Nuclear receptor subfamily 2, group F, member 2. | 0.687 |
W5M717_LEPOC | rpl9 | ENSLOCP00000004175 | ENSLOCP00000016020 | Nuclear receptor corepressor 1. | Ribosomal protein L9. | 0.482 |
W5MFZ2_LEPOC | W5N0P4_LEPOC | ENSLOCP00000007301 | ENSLOCP00000014203 | Nuclear receptor corepressor 2. | E1A binding protein p300 a. | 0.764 |
W5MFZ2_LEPOC | med1 | ENSLOCP00000007301 | ENSLOCP00000015717 | Nuclear receptor corepressor 2. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.672 |
W5MFZ2_LEPOC | nr2f2 | ENSLOCP00000007301 | ENSLOCP00000017729 | Nuclear receptor corepressor 2. | Nuclear receptor subfamily 2, group F, member 2. | 0.687 |
W5MFZ2_LEPOC | rpl9 | ENSLOCP00000007301 | ENSLOCP00000016020 | Nuclear receptor corepressor 2. | Ribosomal protein L9. | 0.482 |
W5N0P4_LEPOC | LOC102685670 | ENSLOCP00000014203 | ENSLOCP00000009622 | E1A binding protein p300 a. | Selenoprotein J. | 0.566 |
W5N0P4_LEPOC | W5M717_LEPOC | ENSLOCP00000014203 | ENSLOCP00000004175 | E1A binding protein p300 a. | Nuclear receptor corepressor 1. | 0.764 |
W5N0P4_LEPOC | W5MFZ2_LEPOC | ENSLOCP00000014203 | ENSLOCP00000007301 | E1A binding protein p300 a. | Nuclear receptor corepressor 2. | 0.764 |
W5N0P4_LEPOC | med1 | ENSLOCP00000014203 | ENSLOCP00000015717 | E1A binding protein p300 a. | Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.748 |
W5N0P4_LEPOC | nr2f2 | ENSLOCP00000014203 | ENSLOCP00000017729 | E1A binding protein p300 a. | Nuclear receptor subfamily 2, group F, member 2. | 0.505 |
W5N0P4_LEPOC | rpl9 | ENSLOCP00000014203 | ENSLOCP00000016020 | E1A binding protein p300 a. | Ribosomal protein L9. | 0.597 |
hey2 | nr2f2 | ENSLOCP00000021360 | ENSLOCP00000017729 | Hes-related family bHLH transcription factor with YRPW motif 2. | Nuclear receptor subfamily 2, group F, member 2. | 0.509 |
hsp90b1 | nr2f2 | ENSLOCP00000018492 | ENSLOCP00000017729 | Heat shock protein 90, beta (grp94), member 1. | Nuclear receptor subfamily 2, group F, member 2. | 0.558 |
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