STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arih2RBR-type E3 ubiquitin transferase. (366 aa)    
Predicted Functional Partners:
cul5
Cullin 5b; Belongs to the cullin family.
    
 
 0.965
rnf7
Ring finger protein 7.
    
 
 0.852
W5MN47_LEPOC
Si:ch211-202c21.7.
    
 
 0.852
ube2l3
Ubiquitin-conjugating enzyme E2L 3a; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.847
rps27a
Ribosomal protein S27a.
   
 0.774
otulin
OTU deubiquitinase with linear linkage specificity b.
    
 0.753
LOC102682818
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
 0.688
optn
Optineurin.
    
 0.688
birc6
Baculoviral IAP repeat containing 6.
    
 0.688
W5NJ26_LEPOC
Uncharacterized protein.
    
   0.644
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.